U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX8970520: Drosophila subpulchrella genome sequencing using PacBio
1 PACBIO_SMRT (Sequel) run: 2.2M spots, 45.4G bases, 10.7Gb downloads

Design: We extracted DNA from adult females following the protocol of Chakraborty et al. 2016. (Nucleic Acids Res. 44, 147.) The DNA was sheared using 20 plunges of 21-gauge needle and size selected using the 30kb lower cutoff size on Blue Pippin size selection system (Sage Science). 30kb SMRTbell template library was prepared from the size selected DNA and was sequenced on 4 SMRTcells of Pacific Biosciences Sequel I platform.
Submitted by: The Rockefeller University
Study: Drosophila subpulchrella breed:Sub33 Genome sequencing and assembly
PRJNA557422 • SRP278081 • All experiments • All runs
show Abstracthide Abstract
Drosophila subpulchrella is a closely-related species of the pest species Drosophila suzukii. We sequenced the genome and transcriptome of this species, to enable the comparative genomic work between D. subpulchrella and D. suzukii.
Sample: Genome_Dsub_PacBio_reads
SAMN15856907 • SRS7226193 • All experiments • All runs
Organism: Drosophila subpulchrella
Library:
Name: Genome_Dsub_PacBio_reads
Instrument: Sequel
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: SINGLE
Runs: 1 run, 2.2M spots, 45.4G bases, 10.7Gb
Run# of Spots# of BasesSizePublished
SRR124765812,166,30245.4G10.7Gb2020-09-03

ID:
11663028

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...